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Based on the combination of IUGR, cleft palate, VSD, hypospadias, and choroid plexus cysts, while specifically considering that the CGH array (microarray) is normal, the differential diagnosis shifts toward single-gene disorders (Mendelian conditions) rather than large chromosomal deletions or duplications.
Here are three primary syndromic differentials for this presentation:
1. Smith-Lemli-Opitz Syndrome (SLOS)
SLOS is an autosomal recessive disorder of cholesterol biosynthesis (DHCR7 gene). It is a "classic" differential for this specific constellation because it mimics chromosomal abnormalities but will return a normal microarray.
Key Findings: IUGR, cleft palate, cardiac defects (like VSD), and notably underdeveloped male genitalia (hypospadias/ambiguous genitalia).
Unique Sign: Postaxial polydactyly or 2-3 toe syndactyly (webbing) is very common.
Diagnostic Tip: Diagnosis is made via a serum 7-dehydrocholesterol (7-DHC) level or gene sequencing, not CGH.
2. Opitz G/BBB Syndrome
This syndrome primarily affects midline structures and can be inherited in X-linked (MID1) or autosomal dominant forms.
Key Findings: Hypospadias is a hallmark of this condition. It also frequently includes cleft lip/palate and congenital heart defects (VSD/ASD).
Clinical Clues: Look for hypertelorism (widely spaced eyes) and laryngeal/esophageal anomalies (breathing or swallowing issues).
Note: Because it is often a single-gene mutation, a standard CGH array will usually be normal unless it is part of a larger 22q11.2 microdeletion (which would have been caught on the array).
3. Kabuki Syndrome
Kabuki syndrome is a multiple congenital anomaly syndrome (KMT2D or KDM6A genes) that can present with a very broad phenotype prenatally.
Key Findings: It is associated with IUGR, cleft palate, and VSD in roughly 30–50% of cases. Genitourinary anomalies like hypospadias or cryptorchidism are also reported.
Clinical Clues: Postnatally, it is identified by "persistent fetal finger pads" and characteristic facial features (long palpebral fissures with eversion of the lower eyelid).
Array Status: Standard CGH is almost always normal; diagnosis requires Exome Sequencing (WES).
Summary Table
| Feature | Smith-Lemli-Opitz | Opitz G/BBB | Kabuki Syndrome |
| Growth | Severe IUGR | Variable | Postnatal/Late IUGR |
| Genitalia | Hypospadias/Ambiguous | Hypospadias | Hypospadias (less common) |
| Cardiac | VSD/ASD/AVSD | VSD/ASD | VSD/Coarctation |
| Next Step | 7-DHC level / DHCR7 gene | MID1 or 22q11.2 testing | KMT2D/KDM6A sequencing |
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